Attention: starting March 28, 2013 this application will use TRF version 4.07b. There might be a slight difference in the number of repeats.

Parameters: Alignment Parameters (match, mismatch, indels) (2, 7, 7) (2, 5, 7) (2, 5, 5) (2, 3, 5) Minimum Alignment Score To Report Repeat 30 40 50 60 70 80 90 100 150 Maximum Period Size 1 2 3 4 5 10 20 30 40 50 100 200 300 400 500 1000 2000 Options: Flanking Sequence Masked Sequence File Data File (See for details) Sequence: Your data must be a DNA sequence in FASTA format. (See for details) Choose one of the following ways to send your data: Upload a file from your directory. Cut and paste sequence.

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Last revised September 11, 2003 Send any questions or comments to: Yevgeniy Gelfand