Parameters:
Alignment Parameters (match, mismatch, indels) (2, 7, 7) (2, 5, 7) (2, 5, 5) (2, 3, 5)

Minimum Alignment Score To Report Repeat 20 30 40 50 60 70 80 90 100 150

Maximum Stem Length 10,000 14,000

Maximum Loop Length 3 5 10 20 30 40 50 100 150 200 250 400 500 1,000 10,000 14,000

Options:
Flanking Sequence Masked Sequence File Data File Wobble Pairing Mirror Repeats (See for details)

Sequence:
Your data must be a DNA sequence in FASTA format. (See for details)
Choose one of the following ways to send your data:

1. Upload a file from your directory.



2. Cut and paste sequence.

Last revised July 5, 2023 Send any questions or comments to: Gary Benson